So, I found a way "around" the SymLink problem.
I copied the sysmon script into the Primary ibay's CGI directory.
While it would work, it would always pop up with a warning about the server's self-signed certificate, even though the script wasn't using https. I dug around, and found that it was because the script was designed to load the following css file: "/server-common/css/sme_core.css" and the code below redirects that to https.
In the Primary site's VirtualHost in httpd.conf:
RewriteRule ^/server-common(/.*|$) https://%{HTTP_HOST}/server-common$1 [L,R]
I remedied that by changing it to read:
RewriteRule ^/server-common(/.*|$) http://%{HTTP_HOST}/server-common$1 [L,R]
Now, I'm fairly certain this is not necessarily insecure, as the only things that can read that directory are still local subnets.
Anyhoo... I'm posting what I've done to see if anyone out there has any feedback on good/bad/ugly.
Thanks