jesse
The backup method you are using will automatically backup all ibays by default, as well as everything else you need to restore the server to a new install of the OS, except installed applications which will need to be reinstalled. This is valid only if you have NOT made any modifications to the backup "inclusions".
I originally read your backup file size as 6Gb, but on reread see you said 6Mb.
What you are seeing does not seem correct.
You should review the backup file to see what is in it, or try Verifying the backup.
As the current workstation backup uses dar, then this following reference from the DAR2 contrib wiki article may be of use to help you open the backup file(s) with midnight commander (mc).
http://wiki.contribs.org/DAR2#Midnight_Commander_.28MC.29_dar-extensionYou say "backup to workstation (local usb disk)".
Are you backing up to a USB disk connected to a workstation or to a USB disk connected to your sme server ?
If a local USB disk attached to sme server, then at a guess your USB is not being mounted properly.
See
http://wiki.contribs.org/USBDisksThe current default workstation backup is very good and works fine.
A prior default backup to desktop had file size limitations, but still worked OK within these limits. That limitation was a reason the DAR2 contrib came to be.
The DAR2 contrib is now superseded in part by the current default workstation backup (which also uses dar).