I had some issues of deleting files where some files where hidden and write protected,
Those files i had issues with where transferred from windows machines to the server.
I could not reset the file permissions inside the ibay from a windows xp or windows 200o pro machines using a shared folder on the smeserver.
The files where transferred onto the server a long time ago.
I believe what might of happened could of been some kind of samba problem in from an older version of samba, that is just a guess.
The files that i had issues with, where on no importance to me, "desktop.ini" and such.
I had to ssh into the server and delete either the directory or the file.
To delete the directory in which the file was in, i used "rm -rf directory" on the server.
The "f" stands for "force".