Thanks JP,
Unfortunately this server is remotely located and not easy to upgrade to SME10RC1 but I definitely plan to do that soon. I have tried to enable smecontribs and remi-safe as above but still failing. Could I have accidently installed a 32 bit package whilst I was try to fix this - I did uninstall and re-install some packages. This whole problem started happening after I installed Softether - I accidently enabled port 443 in the Windows config which killed the server manager but not sure what damaged I caused trying to fix it. Full Yum transaction below:
[root@server ~]# yum install smeserver-webapps-common --enablerepo=fws,epel,smecontribs,remi-safe
Loaded plugins: fastestmirror, post-transaction-actions, smeserver
Setting up Install Process
Loading mirror speeds from cached hostfile
* epel: d2lzkl7pfhq30w.cloudfront.net
* smeaddons: sme-mirror.tw.co.nz
* smecontribs: sme-mirror.tw.co.nz
* smeextras: sme-mirror.tw.co.nz
* smeos: sme-mirror.tw.co.nz
* smeupdates: sme-mirror.tw.co.nz
Resolving Dependencies
--> Running transaction check
---> Package smeserver-webapps-common.x86_64 0:0.3.2-1.el6.fws will be installed
..........
---> Package oniguruma5php.x86_64 0:6.9.6-1.el6.remi will be installed
---> Package php-bcmath.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-bcmath-5.3.3-46.el6_6.x86_64
---> Package php-fpm.x86_64 0:5.3.3-46.el6_6 will be installed
---> Package php72-php-pdo.x86_64 0:7.2.34-1.el6.remi will be installed
---> Package php73-php-pdo.x86_64 0:7.3.25-1.el6.remi will be installed
---> Package policycoreutils-python.x86_64 0:2.0.83-19.47.el6_6.1 will be installed
--> Processing Dependency: policycoreutils = 2.0.83-19.47.el6_6.1 for package: policycoreutils-python-2.0.83-19.47.el6_6.1.x86_64
--> Processing Dependency: libsemanage-python >= 2.0.43-4 for package: policycoreutils-python-2.0.83-19.47.el6_6.1.x86_64
--> Processing Dependency: audit-libs-python >= 1.4.2-1 for package: policycoreutils-python-2.0.83-19.47.el6_6.1.x86_64
--> Processing Dependency: setools-libs-python for package: policycoreutils-python-2.0.83-19.47.el6_6.1.x86_64
--> Processing Dependency: libselinux-python for package: policycoreutils-python-2.0.83-19.47.el6_6.1.x86_64
--> Processing Dependency: libcgroup for package: policycoreutils-python-2.0.83-19.47.el6_6.1.x86_64
---> Package scl-utils.x86_64 0:20120927-27.el6_6 will be installed
--> Running transaction check
---> Package audit-libs-python.x86_64 0:2.3.7-5.el6 will be installed
--> Processing Dependency: audit-libs = 2.3.7-5.el6 for package: audit-libs-python-2.3.7-5.el6.x86_64
---> Package glibc.i686 0:2.12-1.149.el6_6.9 will be installed
--> Processing Dependency: glibc-common = 2.12-1.149.el6_6.9 for package: glibc-2.12-1.149.el6_6.9.i686
---> Package libcgroup.x86_64 0:0.40.rc1-15.el6_6 will be installed
---> Package libselinux-python.x86_64 0:2.0.94-7.el6 will be installed
---> Package libsemanage-python.x86_64 0:2.0.43-5.1.el6 will be installed
---> Package libzip5.x86_64 0:1.7.3-1.el6.remi will be installed
---> Package php-bcmath.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-bcmath-5.3.3-46.el6_6.x86_64
---> Package php-fpm.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-fpm-5.3.3-46.el6_6.x86_64
---> Package php-intl.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-intl-5.3.3-46.el6_6.x86_64
---> Package php-process.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-process-5.3.3-46.el6_6.x86_64
---> Package php-snmp.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-snmp-5.3.3-46.el6_6.x86_64
---> Package php-soap.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-soap-5.3.3-46.el6_6.x86_64
---> Package php-xmlrpc.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-xmlrpc-5.3.3-46.el6_6.x86_64
---> Package policycoreutils-python.x86_64 0:2.0.83-19.47.el6_6.1 will be installed
--> Processing Dependency: policycoreutils = 2.0.83-19.47.el6_6.1 for package: policycoreutils-python-2.0.83-19.47.el6_6.1.x86_64
---> Package setools-libs-python.x86_64 0:3.3.7-4.el6 will be installed
--> Processing Dependency: setools-libs = 3.3.7-4.el6 for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libsefs.so.4(VERS_4.0)(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libseaudit.so.4(VERS_4.2)(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libseaudit.so.4(VERS_4.1)(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libqpol.so.1(VERS_1.4)(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libqpol.so.1(VERS_1.3)(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libqpol.so.1(VERS_1.2)(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libpoldiff.so.1(VERS_1.3)(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libpoldiff.so.1(VERS_1.2)(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libapol.so.4(VERS_4.1)(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libapol.so.4(VERS_4.0)(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libsefs.so.4()(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libseaudit.so.4()(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libqpol.so.1()(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libpoldiff.so.1()(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
--> Processing Dependency: libapol.so.4()(64bit) for package: setools-libs-python-3.3.7-4.el6.x86_64
---> Package tcl.x86_64 1:8.5.7-6.el6 will be installed
--> Running transaction check
---> Package audit-libs.i686 0:2.3.7-5.el6 will be installed
---> Package glibc.i686 0:2.12-1.149.el6_6.9 will be installed
--> Processing Dependency: glibc-common = 2.12-1.149.el6_6.9 for package: glibc-2.12-1.149.el6_6.9.i686
---> Package php-bcmath.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-bcmath-5.3.3-46.el6_6.x86_64
---> Package php-fpm.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-fpm-5.3.3-46.el6_6.x86_64
---> Package php-intl.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-intl-5.3.3-46.el6_6.x86_64
---> Package php-process.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-process-5.3.3-46.el6_6.x86_64
---> Package php-snmp.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-snmp-5.3.3-46.el6_6.x86_64
---> Package php-soap.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-soap-5.3.3-46.el6_6.x86_64
---> Package php-xmlrpc.x86_64 0:5.3.3-46.el6_6 will be installed
--> Processing Dependency: php-common(x86-64) = 5.3.3-46.el6_6 for package: php-xmlrpc-5.3.3-46.el6_6.x86_64
---> Package policycoreutils-python.x86_64 0:2.0.83-19.47.el6_6.1 will be installed
--> Processing Dependency: policycoreutils = 2.0.83-19.47.el6_6.1 for package: policycoreutils-python-2.0.83-19.47.el6_6.1.x86_64
---> Package setools-libs.x86_64 0:3.3.7-4.el6 will be installed
--> Finished Dependency Resolution
Error: Package: glibc-2.12-1.149.el6_6.9.i686 (updates)
Requires: glibc-common = 2.12-1.149.el6_6.9
Installed: glibc-common-2.12-1.212.el6_10.3.x86_64 (@smeupdates)
glibc-common = 2.12-1.212.el6_10.3
Available: glibc-common-2.12-1.149.el6.x86_64 (base)
glibc-common = 2.12-1.149.el6
Available: glibc-common-2.12-1.149.el6_6.4.x86_64 (updates)
glibc-common = 2.12-1.149.el6_6.4
Available: glibc-common-2.12-1.149.el6_6.5.x86_64 (updates)
glibc-common = 2.12-1.149.el6_6.5
Available: glibc-common-2.12-1.149.el6_6.7.x86_64 (updates)
glibc-common = 2.12-1.149.el6_6.7
Available: glibc-common-2.12-1.149.el6_6.9.x86_64 (updates)
glibc-common = 2.12-1.149.el6_6.9
Available: glibc-common-2.12-1.209.el6_9.1.x86_64 (smeos)
glibc-common = 2.12-1.209.el6_9.1
Error: Package: php-xmlrpc-5.3.3-46.el6_6.x86_64 (updates)
Requires: php-common(x86-64) = 5.3.3-46.el6_6
Installed: php-common-5.3.3-50.el6_10.x86_64 (@smeupdates)
php-common(x86-64) = 5.3.3-50.el6_10
Available: php-common-5.3.3-38.el6.x86_64 (base)
php-common(x86-64) = 5.3.3-38.el6
Available: php-common-5.3.3-40.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-40.el6_6
Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-46.el6_6
Available: php-common-5.3.3-49.el6.x86_64 (smeos)
php-common(x86-64) = 5.3.3-49.el6
Error: Package: policycoreutils-python-2.0.83-19.47.el6_6.1.x86_64 (updates)
Requires: policycoreutils = 2.0.83-19.47.el6_6.1
Installed: policycoreutils-2.0.83-30.1.el6_8.x86_64 (@smeos)
policycoreutils = 2.0.83-30.1.el6_8
Available: policycoreutils-2.0.83-19.47.el6.x86_64 (base)
policycoreutils = 2.0.83-19.47.el6
Available: policycoreutils-2.0.83-19.47.el6_6.1.x86_64 (updates)
policycoreutils = 2.0.83-19.47.el6_6.1
Error: Package: php-process-5.3.3-46.el6_6.x86_64 (updates)
Requires: php-common(x86-64) = 5.3.3-46.el6_6
Installed: php-common-5.3.3-50.el6_10.x86_64 (@smeupdates)
php-common(x86-64) = 5.3.3-50.el6_10
Available: php-common-5.3.3-38.el6.x86_64 (base)
php-common(x86-64) = 5.3.3-38.el6
Available: php-common-5.3.3-40.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-40.el6_6
Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-46.el6_6
Available: php-common-5.3.3-49.el6.x86_64 (smeos)
php-common(x86-64) = 5.3.3-49.el6
Error: Package: php-soap-5.3.3-46.el6_6.x86_64 (updates)
Requires: php-common(x86-64) = 5.3.3-46.el6_6
Installed: php-common-5.3.3-50.el6_10.x86_64 (@smeupdates)
php-common(x86-64) = 5.3.3-50.el6_10
Available: php-common-5.3.3-38.el6.x86_64 (base)
php-common(x86-64) = 5.3.3-38.el6
Available: php-common-5.3.3-40.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-40.el6_6
Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-46.el6_6
Available: php-common-5.3.3-49.el6.x86_64 (smeos)
php-common(x86-64) = 5.3.3-49.el6
Error: Package: php-fpm-5.3.3-46.el6_6.x86_64 (updates)
Requires: php-common(x86-64) = 5.3.3-46.el6_6
Installed: php-common-5.3.3-50.el6_10.x86_64 (@smeupdates)
php-common(x86-64) = 5.3.3-50.el6_10
Available: php-common-5.3.3-38.el6.x86_64 (base)
php-common(x86-64) = 5.3.3-38.el6
Available: php-common-5.3.3-40.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-40.el6_6
Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-46.el6_6
Available: php-common-5.3.3-49.el6.x86_64 (smeos)
php-common(x86-64) = 5.3.3-49.el6
Error: Package: php-bcmath-5.3.3-46.el6_6.x86_64 (updates)
Requires: php-common(x86-64) = 5.3.3-46.el6_6
Installed: php-common-5.3.3-50.el6_10.x86_64 (@smeupdates)
php-common(x86-64) = 5.3.3-50.el6_10
Available: php-common-5.3.3-38.el6.x86_64 (base)
php-common(x86-64) = 5.3.3-38.el6
Available: php-common-5.3.3-40.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-40.el6_6
Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-46.el6_6
Available: php-common-5.3.3-49.el6.x86_64 (smeos)
php-common(x86-64) = 5.3.3-49.el6
Error: Package: php-snmp-5.3.3-46.el6_6.x86_64 (updates)
Requires: php-common(x86-64) = 5.3.3-46.el6_6
Installed: php-common-5.3.3-50.el6_10.x86_64 (@smeupdates)
php-common(x86-64) = 5.3.3-50.el6_10
Available: php-common-5.3.3-38.el6.x86_64 (base)
php-common(x86-64) = 5.3.3-38.el6
Available: php-common-5.3.3-40.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-40.el6_6
Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-46.el6_6
Available: php-common-5.3.3-49.el6.x86_64 (smeos)
php-common(x86-64) = 5.3.3-49.el6
Error: Package: php-intl-5.3.3-46.el6_6.x86_64 (updates)
Requires: php-common(x86-64) = 5.3.3-46.el6_6
Installed: php-common-5.3.3-50.el6_10.x86_64 (@smeupdates)
php-common(x86-64) = 5.3.3-50.el6_10
Available: php-common-5.3.3-38.el6.x86_64 (base)
php-common(x86-64) = 5.3.3-38.el6
Available: php-common-5.3.3-40.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-40.el6_6
Available: php-common-5.3.3-46.el6_6.x86_64 (updates)
php-common(x86-64) = 5.3.3-46.el6_6
Available: php-common-5.3.3-49.el6.x86_64 (smeos)
php-common(x86-64) = 5.3.3-49.el6
You could try using --skip-broken to work around the problem
You could try running: rpm -Va --nofiles --nodigest
Sorry I had to chop some out as it exceeded the maximum allowed length.