I have not really looked at the source code but briefly looking at SME6.0.1 I just install for testing purpose, php is *really* old, 4.1.2? I believe there was heap-based buffer overflow in php prior to 4.2.x Apache is 1.3.27 (date build was Sep 2002). All apache up to 1.3.29 has remote xploit issue. These alone could let crackers go right to your front door.
I hope my explanation above is all wrong. otherwise, all SME users are not secure at all with the current release. I just check out update mirror, the only I see there is initscripts? So, there has been no update for the above packages at all?