cmwi96
> I recently upgraded from older versions....
So it seems that you have NEVER got the newer version of spamassassin to work correctly.
What were the older versions you were using eg rpm name & number ?
There may be a clash with remnants of the older rpms eg an inappropriate custom template and/or configuration ??
Perhaps you should uninstall all rpms associated with antivirus, spam filter and any earlier spamassassin versions. You may also need to manually delete any custom templates associated with earlier versions that should not be there now, and any db's in /home/e-smith that should not be there.
When your system is "clean", then do a reinstall.
What system spec do you have, processor, RAM etc ?
Low end stuff can very quickly suffer when using spamassassin.
You may also want to look at these suggestions, although I don't think they are your current problem, see
http://mirror.contribs.org/smeserver/contribs/rmitchell/smeserver/howto/Mail%20system%20tweaks%20HOWTO%20for%20sme%20server.htm