Ah well Im pretty limited as far as hardware goes, but you could set up another server and use ftp to copy the data contents from server1 to server2. ftp is pretty insecure so be sure to check the hosts.allow and hosts.deny files. You can set it up to only allow connections from specific IP addresses and deny any access from all others. But um, ftp doesnt encrypt passwords, so watch out for that too. If its a completely private network then FTP will be fine.
As far as "some files", what I meant was I did back up some MS word documents and jpgs for several users to the external drive just to have some "test" data to restore. When I did restore those files onto a fresh install of SME, the permissions were retained. That is, john smiths files went back into his home directory and only john smith can see/change those files. This data "restore" was only using the cp command from the mounted external drive, thats all. Keep in mind that in order for this to work I had to restore the server configuration files to the fresh install (See Restore from desktop).