innorevtech
>...or does the option in Remote Settings -> FTP Settings -> Allow FTP -> No Access still override this?
FTP must be enabled in Remote Access for ftp to work at all.
As well as reading the manual (which would answer your question), the answer is also given in the Remote Access panel !
>...how does the SME differentiate between an ibay called "mywebsite"
> and a subfolder in ibays/Primary/html/ called "mywebsite"?
Preference is given to the folder in Primary if you called that up in a URL eg
www.yourdomain/mywebsiteThe ibay will be ignored.
Good practice is to only have one occurence of a "name" in the sme system, be it a user account, ibay name, Primary subfolder name etc.
In most cases the system will only let you enter a name once, Primary ibay subfolders are an exception though. It's best not to do things that can cause confusion later when you forget why you named something the way you did.